CDS

Accession Number TCMCG017C11158
gbkey CDS
Protein Id OMP00093.1
Location complement(73068..73799)
GeneID InterPro:IPR007832
Organism Corchorus olitorius
locus_tag COLO4_12944

Protein

Length 243aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA215141, BioSample:SAMN03160584
db_source AWUE01014982.1
Definition RNA polymerase Rpc34 [Corchorus olitorius]
Locus_tag COLO4_12944

EGGNOG-MAPPER Annotation

COG_category K
Description DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs
KEGG_TC -
KEGG_Module M00181        [VIEW IN KEGG]
KEGG_Reaction R00435        [VIEW IN KEGG]
R00441        [VIEW IN KEGG]
R00442        [VIEW IN KEGG]
R00443        [VIEW IN KEGG]
KEGG_rclass RC02795        [VIEW IN KEGG]
BRITE br01611        [VIEW IN KEGG]
ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko03021        [VIEW IN KEGG]
KEGG_ko ko:K03025        [VIEW IN KEGG]
EC -
KEGG_Pathway ko00230        [VIEW IN KEGG]
ko00240        [VIEW IN KEGG]
ko01100        [VIEW IN KEGG]
ko03020        [VIEW IN KEGG]
ko04623        [VIEW IN KEGG]
ko05169        [VIEW IN KEGG]
map00230        [VIEW IN KEGG]
map00240        [VIEW IN KEGG]
map01100        [VIEW IN KEGG]
map03020        [VIEW IN KEGG]
map04623        [VIEW IN KEGG]
map05169        [VIEW IN KEGG]
GOs GO:0000428        [VIEW IN EMBL-EBI]
GO:0001817        [VIEW IN EMBL-EBI]
GO:0001819        [VIEW IN EMBL-EBI]
GO:0002682        [VIEW IN EMBL-EBI]
GO:0002684        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003677        [VIEW IN EMBL-EBI]
GO:0003690        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0005666        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0030880        [VIEW IN EMBL-EBI]
GO:0031347        [VIEW IN EMBL-EBI]
GO:0031349        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032479        [VIEW IN EMBL-EBI]
GO:0032481        [VIEW IN EMBL-EBI]
GO:0032648        [VIEW IN EMBL-EBI]
GO:0032728        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044451        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045088        [VIEW IN EMBL-EBI]
GO:0045089        [VIEW IN EMBL-EBI]
GO:0048518        [VIEW IN EMBL-EBI]
GO:0048583        [VIEW IN EMBL-EBI]
GO:0048584        [VIEW IN EMBL-EBI]
GO:0050776        [VIEW IN EMBL-EBI]
GO:0050778        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0051239        [VIEW IN EMBL-EBI]
GO:0051240        [VIEW IN EMBL-EBI]
GO:0055029        [VIEW IN EMBL-EBI]
GO:0061695        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0080134        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1902494        [VIEW IN EMBL-EBI]
GO:1990234        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGAGTCGGTTTCAAGGAGCTAATGCCCTCAAAAGGAAACGGCCAGGCTCTGCTTCTGATGCTCTGACAGATCATGACCAAGCGGTTCTTGATGTAATCCGGAGTAAACAAGACATGGGAATCTACCAACGAGACATAAAACGCGAAATTCATATAAAAAATGGAATTAATCTCCCGGATCCCGCGATTACCAAGTGTCTCAAGTCACTTGTAACCAAAAATCTTATAAAAGAAGTCAAAAACATCCAAAGCCGTGGTAAGAAGCATTTCATCTCTGTAGATTTTGAACCTTCCAATGAAATAACCGGCGGGGCATTTTACAACGAAGGCAGTCTCGATACAGAGATGATAGCACAGTTGAGACGGCTGTGTTGGAACCATATAAATGGTTTACAGATTGCTACTTTGGAAGCGGTTACCGAATATATTAATAGGACCAAAGTTCCGAAAGTTCAATTGTCAAAACAAGAAACGGCAGAGCTTATCGGGGCTTTGATTTTGGATAATGAGGTTATGGAAGTGAAAAGTAGTGGAACAGGGGAGTTTGCTTCAATTCCAGTTGGGAAAGTTTGTTATAAATGCATCAGTAAGAGAGCTCATGGAGCGGAACCAAAGGTAGGAGCGTTTGCTTCCATTCCTTGTGGAGTTTGTCCACGGATAAGTTATTGTACACCTGATGGCATAATCTCGCCAAAAACCTGTGTTTATTACAATAAGTGGTTGGATTTTTAG
Protein:  
MSRFQGANALKRKRPGSASDALTDHDQAVLDVIRSKQDMGIYQRDIKREIHIKNGINLPDPAITKCLKSLVTKNLIKEVKNIQSRGKKHFISVDFEPSNEITGGAFYNEGSLDTEMIAQLRRLCWNHINGLQIATLEAVTEYINRTKVPKVQLSKQETAELIGALILDNEVMEVKSSGTGEFASIPVGKVCYKCISKRAHGAEPKVGAFASIPCGVCPRISYCTPDGIISPKTCVYYNKWLDF